PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lus10041546
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Linaceae; Linum
Family WRKY
Protein Properties Length: 207aa    MW: 23660.3 Da    PI: 8.4701
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lus10041546genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY101.35.6e-32127185159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+
  Lus10041546 127 LDDGYRWRKYGQKAVKKNKFPRSYYRCTYQGCNVKKQVQRVNKDEGVVTTTYEGIHTHP 185
                  59********************************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.0E-32112185IPR003657WRKY domain
SuperFamilySSF1182904.71E-29119186IPR003657WRKY domain
PROSITE profilePS5081129.069122187IPR003657WRKY domain
SMARTSM007743.1E-37127186IPR003657WRKY domain
PfamPF031064.1E-26128185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MEKFQMLFPF SSTATTSSSS SSTCYSDHCH HLLTSSPTTI NNNTSFNGQV MMRSPSDHHH  60
HRDDKMFHDY VDQTGGSCDH REEQALTMEA VAADHIVDHD GGSSGKVKKV KKQPKYAFQT  120
RSQVDILDDG YRWRKYGQKA VKKNKFPRSY YRCTYQGCNV KKQVQRVNKD EGVVTTTYEG  180
IHTHPIEKPS ENFEHILSQM QIYTPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-26117186776Probable WRKY transcription factor 4
2lex_A4e-26117186776Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM5931627e-40KM593162.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY106) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007216937.16e-69hypothetical protein PRUPE_ppa016459mg
TrEMBLM5WY447e-69M5WY44_PRUPE; Uncharacterized protein
STRINGPOPTR_0001s33560.16e-65(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF115634110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.14e-55WRKY DNA-binding protein 75